PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016397-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 232aa    MW: 25218.5 Da    PI: 8.1265
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016397-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.000381103123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_016397-RA  81 FSCNYCQRKFFSSQALGGHQNAH 103
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-679108No hitNo description
PROSITE profilePS5015711.34481108IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MLSSLYKKPS KDTTISTCLT NLMKLEPNMR PISLNLSLSF KNSDSDMGGT KESVGLSLSS  60
TSESSSEVAP HTPSTSFPRV FSCNYCQRKF FSSQALGGHQ NAHKRERTLA KRALRMGIFS  120
ERYASLASLP LHGSAFRSLG IKAHSMHHGI AAPERPPEIK TGARFEHSYF GPPMLLEDDD  180
AELFWPGSFQ QVPEGIGSHP GFELAGSSSF NFVAVAPAPE ADSSPPDLTL RL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271186.11e-165PREDICTED: zinc finger protein 4-like
RefseqXP_010271187.11e-165PREDICTED: zinc finger protein 4-like
RefseqXP_010271188.11e-165PREDICTED: zinc finger protein 4-like
SwissprotQ392631e-51ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A067F4038e-95A0A067F403_CITSI; Uncharacterized protein
TrEMBLV4UB178e-95V4UB17_9R
STRINGPOPTR_0008s13730.19e-89(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.11e-46zinc finger protein 4